SNP Profiles of CC 10 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
1._CC_10	_	_	GG	CT	TT	AA	_	GT	CT	CT	AA	AA	CT	AG
2._CC_10	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
3._CC_10	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
4._CC_10	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
5._CC_10	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
6._GC-08-271-8-43	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
7._GC-08-271-8-43	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
8._GC-08-271-8-43	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
9._GC-08-271-8-43	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
10._CC_10	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
11._GC-08-271-8-43	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
12._CC_10_Fld#_47_Plt#_5	AG	AG	CG	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AG
13._CC_10_Fld#_47A_Plt#_4	AG	AG	CG	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AG
14._CC_10_Fld#_47B_Plt#_2	AG	AG	CC	GG	AG	AA	AG	AA	_	_	AA	AG	AG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GT	AG	CT	AC	CC	TT	CT	CC
1._CC_10	CT	AA	GG	TT	CC	GG	GT	AG	CT	_	CC	TT	CT	CC
2._CC_10	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
3._CC_10	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
4._CC_10	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
5._CC_10	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
6._GC-08-271-8-43	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
7._GC-08-271-8-43	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
8._GC-08-271-8-43	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
9._GC-08-271-8-43	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
10._CC_10	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
11._GC-08-271-8-43	CT	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC
12._CC_10_Fld#_47_Plt#_5	AG	AA	GG	AA	GG	CG	AC	_	AG	AC	CC	AC	_	CC
13._CC_10_Fld#_47A_Plt#_4	AG	AA	GG	AA	GG	CG	AC	_	AG	AC	CC	AC	_	CC
14._CC_10_Fld#_47B_Plt#_2	AG	AA	GG	AG	GG	CC	CC	_	AA	AC	CC	AC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	TT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
1._CC_10	AG	GG	_	CT	AG	_	AC	_	GT	CC	TT	GG	X_X	X_X
2._CC_10	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
3._CC_10	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
4._CC_10	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
5._CC_10	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
6._GC-08-271-8-43	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
7._GC-08-271-8-43	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
8._GC-08-271-8-43	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
9._GC-08-271-8-43	AG	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
10._CC_10	AG	GG	AT	_	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
11._GC-08-271-8-43	AG	GG	AT	_	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
12._CC_10_Fld#_47_Plt#_5	_	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X
13._CC_10_Fld#_47A_Plt#_4	_	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X
14._CC_10_Fld#_47B_Plt#_2	_	GG	AT	AG	AA	GG	AA	AA	AC	CC	AT	CG	X_X	X_X

Input profile: CC_10

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Malaysian Cocoa Board (MCB), Malaysia

Location: Trial 1/Rep 1 45

Dapeng Zhang, 2016

1._CC_10

identical
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._CC_10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 9

Dapeng Zhang, 2016

3._CC_10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 7

Dapeng Zhang, 2016

4._CC_10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 5

Dapeng Zhang, 2016

5._CC_10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CC_10 GC-08-271-8-43

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._CC_10 GC-08-271-8-43

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._CC_10 GC-08-271-8-43

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: Dead

9._CC_10 GC-08-271-8-43

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: Dead

10._CC_10

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 2

Dapeng Zhang, 2016

11._CC_10 GC-08-271-8-43

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._CC_10 CC_10_Fld#_47_Plt#_5

50 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 47, Tree: 5

Notes: TARS_Cacao_collection

13._CC_10 CC_10_Fld#_47A_Plt#_4

50 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 47A, Tree: 4

14._CC_10 CC_10_Fld#_47B_Plt#_2

38.6 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 47B, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25